Carefully measure the distance from the rear axle to the swing arm pivot point on both sides.....and confirm the distance is the same for both.

If that distance measures good and the fender still looks out of alignment with the tire.....then maybe it is the fender that is wrong?

I bought a Honda Trail 90 a couple years ago and it looked like the rear fender was off center.  I was trying to figure out how to get it straightened, and then when I took the rear wheel off to put on a new tire I discovered the right side chain adjuster bracket was not correct and had too big of an axle hole.  When you placed the marks on the adjusters at the same index mark - the one on the right side did not move the axle back as far as the "too large" hole didn't start pulling on the axle until the excess hole was used up.  A new and proper adjuster bracket solved the issue.

I am a total idiot. I didn't even think that the crashed savage I bought could have a messed up rear fender for some stupid reason. I measured everything and taped a stick to rear brake light to finally realize it after you guys told me that. If it was any farther to the right it would hit the swing arm at the front too, how I didn't notice that is beyond me. Everything is kosher on the bike, just a bent rear fender. I'm relieved and feeling dumb .
Thanks everyone!