Now I know what to do if ever I have to pull one.
I'll cut them.
But, if I'm not sure about how to put something together I mark each place I cut. Here,yellow is yellow..
And Ol' Yeller has his legs, even If they aren't exactly where they were.

I apologise I haven't responded. For some reason I'm not getting email notification when I get a response like I did before .I clipped the wires because yes I have moved the battery under the frame just in front of the swing arm . Also moved the regulator rectifier. And most the other electronics under the seat in between the frame rales so that it has that whole open area under seat behind the motor. I ran most the wires the the backbone under the tank and int the frame as much as possible . While doing this I shortened and lenghthend some wires . And accidentally clipped those  wires while doing it . So to clarify it doesn't matter what yellow wire goes where ?  Lil confused at some of the response s . I only removed the cover to see if I can figure out where the wires go myself.  Just trying to button the last few things  to get this thing up and running again . And working on the lil bugs / tweaks I gotta make to get it how I want and have the best power / reliability  I can have  and be super versatile .  And looking to see where the difference will be in the 4 spd to the 5 spd . Thanks agian for your help and sorry about the delay in response I'll just try to check in on the post more often .